Home | Browse CottonDB | Quick Queries | FPC Viewer | Genome Browser | BLAST Server |
| Map Summaries | Maps | Feature Search | Matrix | Map Sets | Species | Help | Tutorial

 

Welcome to the Matrix

Each cell in the matrix shows the number of correspondences (and maps) between each pair. A correspondence is any relationship between two features.

Restrict Reference Sets By:         Use Colors Hide Empty Rows
Reference Set Bin Genetic Reference Reference Set
AD:Gh/Gb AD:Gb/Gh AD:Gh/Gb AD:Gh/Gh AD:Gh/Gto A:Gar/Gar A:Gar/Ghe A:Ghe/Gar D:Gtr/Gra G:Gne/Gau AD:Ref_Map
  Monsanto SSR Bin Map 3-79 x NM-24016, RIL (2008) Hai-7124 x Junmian-1, BC1 (2008) Hai-7124 x Junmian-1, F2 (2008) Pima S-7 x Empire, F2 (2007) Pima S-7 x im, F2 (2007) Pima S-7 x n2, F2 (2007) Acala-44 x Pima S-7, F2 (2004) CCRI-36 x Hai-7124 ,F2 (2007) CAMD-E x Seaberry, F2 (1998) Deltapine x Giza-83, F2 (2008) Deltapine-61 x Seaberry, F2 (2000) Emian-22 x 3-79, BC1 (2008) Guazuncho-2 x VH8-4602, BC1 (2005) Guazuncho-2 x VH8-4602, BC2 (2006) Handan-208 x Pima-90, F2 (2007) Palmeri x K-101, F2 (2007) Sic'on x F-177, F2 (2004) TM-1 x 3-79, RIL (2006) TM-1 x Hai-7124, BC1 (2007) Tamcot-2111 x Pima S-6, BC3F2 (2005) Vgs x (TM-1 x Hai-7124), DH (2002) Vgs x (TM-1 x Hai-7124), DH (2005) Xinluzao-1 x Hai-7124, F2 (2008) 7235 x TM-1, RIL (2007) DES 119-5 x MD51ne, F2,3 (2002) Deltapine-61 x Texas-701, F2 (2007) HQ95-6 x MD51ne, F2,3 (2002) HS-46 x MARCABUCAG8US-1-88, F2,3 (1998) MD-5678ne x Prema, F2,3 (2000) (Simian-3 x Sumian-12) x (Zhong-4133 x 8891), 4WC (2008) Yumian-1 x T586, F2:3 (2005) Zhongmiansuo-12 x 8891, RIL (2007) TM-1 x WT-936, F2 (2005) Jiang-Ling-Zhong-Mian x Zhe-Jiang-Xiao-Shan-Lu-Shu, F2 SMA-4 x A1-97, F2 (2005) A1-97 x A2-47, F2 (1999) Gt x Gr, F2 (2004) Gos-5024 x Hyb 601-2, F2-a (2003) Gos-5024 x Hyb 601-2, F2-n (2003) Ref_map  
Genetic AD:Gh/Gb
Tamcot-2111 x Pima S-6, BC3F2 (2005) 		TP-BC3F2_A01 - - - - 8(2) 27(9) 29(10) - 4(2) 16(3) - 14(3) 2(1) 16(3) 3(2) 7(2) 172(15) 19(7) 2(1) 6(2) 61(13) - 4(2) 2(1) - - - - - - - - - 21(11) - 13(5) 1(1) 9(2) - - - TP-BC3F2_A01 AD:Gh/Gb
Tamcot-2111 x Pima S-6, BC3F2 (2005) 		Genetic
TP-BC3F2_A02 - 2(2) 2(1) 1(1) 9(1) 22(6) 22(6) 1(1) 5(2) 16(4) 2(2) 15(3) 3(1) 26(8) 1(1) 4(2) 144(12) 13(3) 2(1) 4(1) 38(10) - 4(2) 4(3) - - - - - - - - - 38(15) 1(1) 6(5) 3(2) 10(3) - - - TP-BC3F2_A02
TP-BC3F2_A03 - - - - 7(4) 36(8) 17(6) - 8(1) 14(5) 4(1) 12(2) 8(2) 18(5) 6(2) 18(5) 174(18) 6(2) 4(2) 10(2) 61(17) - 12(3) 6(3) 2(2) - 1(1) - - - 1(1) 1(1) 1(1) 23(11) - 14(4) 4(2) 14(5) - - - TP-BC3F2_A03
TP-BC3F2_chr01 - - - - 7(2) 25(8) 22(6) 6(2) 4(2) 10(2) - 8(2) 3(2) 14(3) 3(2) 6(2) 121(15) 16(3) - 3(2) 38(13) - 3(3) 2(1) - - 1(1) - - - - 1(1) - 24(11) 2(1) 13(6) 6(1) 13(1) - - - TP-BC3F2_chr01
TP-BC3F2_chr02 - 3(2) - - 3(2) 22(8) 14(5) - 6(4) 5(1) - 6(2) 4(3) 11(5) 3(2) 4(3) 101(11) 11(3) 4(3) 3(2) 31(8) - 4(3) 3(2) - - - - - - - - - 9(3) 1(1) 7(2) 2(1) 7(4) - - - TP-BC3F2_chr02
TP-BC3F2_chr03 - - - - 5(3) 25(12) 26(12) - 1(1) 12(4) - 10(4) 1(1) 14(6) 2(2) 3(2) 138(17) 15(5) 1(1) 1(1) 45(16) - - 1(1) - - - - - - - - - 28(12) - 12(4) 4(3) 16(5) - - - TP-BC3F2_chr03
TP-BC3F2_chr04 - 1(1) - - 8(4) 35(14) 31(14) 2(1) 2(1) 13(5) - 16(9) - 7(5) 1(1) 1(1) 175(21) 13(5) - 1(1) 61(20) - 1(1) 1(1) 1(1) - - - - - - - - 38(16) - 32(10) 8(3) 13(7) - - - TP-BC3F2_chr04
TP-BC3F2_chr05 - 1(1) - 1(1) 12(4) 32(12) 26(8) - 4(3) 21(7) 1(1) 16(5) 3(2) 16(8) 4(4) 8(6) 244(20) 16(5) 2(2) 4(3) 69(18) - 4(3) 2(1) - - - - - - - 1(1) - 33(11) 1(1) 19(5) 12(3) 25(7) - - - TP-BC3F2_chr05
TP-BC3F2_chr06 - 1(1) - - 8(2) 14(6) 14(8) 1(1) 2(2) 9(3) 4(1) 10(4) 2(2) 14(5) 1(1) 1(1) 96(10) 13(5) 1(1) 2(2) 25(9) - 2(2) 1(1) - - - - - - - - - 17(12) 1(1) 13(3) 3(2) 6(2) - - - TP-BC3F2_chr06
TP-BC3F2_chr07 - - - - 8(3) 18(8) 24(10) - 1(1) 22(3) - 12(4) 2(2) 16(7) - 3(2) 156(20) 17(7) 1(1) - 53(19) - 1(1) 1(1) - - 1(1) - - - - - - 32(13) - 18(8) 13(6) 26(7) - - - TP-BC3F2_chr07
TP-BC3F2_chr09 - - 6(2) - 6(2) 26(9) 30(10) 3(3) 16(4) 18(5) 1(1) 13(3) 7(3) 26(5) 9(5) 10(4) 144(15) 10(2) 4(2) 15(5) 42(14) - 21(7) 10(3) 3(2) - - - - - 2(1) 1(1) 4(3) 25(7) 2(2) 12(6) 3(1) 10(2) - - - TP-BC3F2_chr09
TP-BC3F2_chr10 - 1(1) - - 7(3) 29(13) 26(11) 1(1) 3(2) 19(7) 1(1) 12(4) 3(2) 14(7) 4(3) 4(2) 159(16) 9(3) 2(2) 4(2) 46(14) - 3(1) 3(2) - - - - - - - 1(1) - 28(15) 1(1) 18(8) 5(1) 21(7) - - - TP-BC3F2_chr10
TP-BC3F2_chr12 - - - - 4(3) 41(9) 61(15) - 2(2) 7(3) - 5(4) 2(2) 13(4) 1(1) 2(2) 180(18) 4(3) 1(1) 3(2) 50(17) - 1(1) 1(1) - - 1(1) - - - - - - 29(14) 1(1) 18(8) 3(2) 15(6) - - - TP-BC3F2_chr12
TP-BC3F2_chr14 - 2(2) - - 14(2) 18(7) 13(6) 5(3) 11(4) 13(4) - 13(4) 7(5) 26(7) 4(4) 11(4) 160(18) 17(5) 5(3) 6(4) 42(17) - 9(3) 5(3) 1(1) - - - - - - - - 26(12) - 16(5) 3(2) 20(3) - - - TP-BC3F2_chr14
TP-BC3F2_chr15 - 1(1) - - 4(2) 41(13) 33(9) 1(1) 2(1) 11(2) - 14(2) 2(2) 13(4) 2(2) 4(2) 151(14) 17(3) - 2(2) 40(11) - 2(2) 1(1) - - 1(1) - - - - - - 30(9) - 12(5) 4(2) 18(5) - - - TP-BC3F2_chr15
TP-BC3F2_chr16 - 1(1) - - 3(3) 20(4) 24(6) - 6(4) 23(5) - 13(4) 3(3) 14(7) 2(2) 9(4) 122(14) 18(4) 1(1) 6(5) 32(13) - 7(4) 3(3) - - 1(1) - - - - 1(1) - 26(8) - 15(6) 6(3) 21(6) - - - TP-BC3F2_chr16
TP-BC3F2_chr17 - 1(1) - - 5(3) 14(7) 14(5) - 4(2) 12(4) 6(1) 11(4) 4(4) 11(6) 3(3) 11(5) 80(15) 11(4) 3(3) 2(2) 23(14) - 4(2) 2(2) 1(1) - - - - - - - - 19(10) 1(1) 8(3) 5(3) 12(5) - - - TP-BC3F2_chr17
TP-BC3F2_chr18 - 1(1) - - 7(3) 38(11) 43(14) 3(2) 9(3) 13(3) - 12(2) 7(2) 23(7) 5(3) 14(3) 186(16) 15(6) 5(2) 12(4) 55(12) - 9(4) 6(2) - - - - - - - 1(1) - 25(10) - 20(6) 4(3) 9(3) - - - TP-BC3F2_chr18
TP-BC3F2_chr20 - - - - 7(4) 16(4) 17(4) - 3(3) 14(6) - 11(4) 1(1) 14(7) 1(1) 3(2) 132(14) 9(3) 1(1) 2(2) 35(13) - 4(3) 1(1) - - - - - - - - - 28(15) - 7(6) 4(1) 21(7) - - - TP-BC3F2_chr20
TP-BC3F2_chr22 - 1(1) - - 3(2) 32(15) 25(11) - 4(3) 11(6) 2(1) 14(7) 3(3) 13(8) 3(3) 9(6) 120(19) 13(5) 1(1) 3(3) 53(18) - 6(4) 3(3) - - 1(1) - - - - - - 17(10) 2(1) 16(6) 5(2) 11(4) - - - TP-BC3F2_chr22
TP-BC3F2_chr23 - - - - 7(3) 19(7) 19(10) 2(2) 2(2) 12(5) - 14(5) 2(2) 12(3) 2(2) 4(4) 152(15) 13(4) 1(1) 3(3) 44(13) - 3(3) 3(2) 1(1) - - - - - 1(1) - 1(1) 18(6) - 11(5) 9(5) 13(5) - - - TP-BC3F2_chr23
TP-BC3F2_chr25 - 1(1) - - 9(2) 21(9) 23(10) 1(1) 4(2) 13(3) 1(1) 12(3) 5(3) 17(7) 6(4) 12(6) 132(17) 11(3) 1(1) 7(5) 37(16) - 7(4) 3(2) - - - - - - - - - 18(7) 2(1) 14(4) 4(1) 14(4) - - - TP-BC3F2_chr25
TP-BC3F2_chr26 - 3(1) - - 8(3) 30(9) 34(11) 2(1) 6(2) 21(8) - 8(4) 5(2) 16(4) 3(2) 9(2) 142(16) 6(4) 2(2) 5(2) 49(15) - 4(3) 3(2) - - - - - - - 1(1) 1(1) 38(15) - 12(4) 5(2) 26(10) - - - TP-BC3F2_chr26
TP-BC3F2_D02 - - 1(1) - 12(4) 47(16) 27(10) - 2(2) 31(13) - 18(9) 3(2) 21(8) 2(1) 6(4) 208(19) 14(7) 1(1) 2(2) 74(18) - 3(3) - 1(1) - 3(2) - - - 2(2) - 1(1) 45(23) - 13(5) 4(2) 31(9) - - - TP-BC3F2_D02
TP-BC3F2_D03 - - - - 7(2) 36(13) 37(13) 1(1) 2(1) 16(2) - 12(2) - 12(2) 3(2) 4(3) 154(16) 16(3) - 1(1) 47(15) - 1(1) 2(1) 1(1) - - - - - - 1(1) - 31(13) - 25(8) 7(2) 13(4) - - - TP-BC3F2_D03
TP-BC3F2_D08 - - 2(1) - 17(5) 35(7) 26(6) 2(1) 5(1) 26(5) - 19(3) 6(1) 15(4) 4(1) 11(2) 221(16) 20(7) 3(2) 7(2) 57(15) - 7(2) 7(1) 1(1) - 2(1) - - - 1(1) - 1(1) 43(14) - 18(5) 10(2) 20(5) - - - TP-BC3F2_D08
  Monsanto SSR Bin Map 3-79 x NM-24016, RIL (2008) Hai-7124 x Junmian-1, BC1 (2008) Hai-7124 x Junmian-1, F2 (2008) Pima S-7 x Empire, F2 (2007) Pima S-7 x im, F2 (2007) Pima S-7 x n2, F2 (2007) Acala-44 x Pima S-7, F2 (2004) CCRI-36 x Hai-7124 ,F2 (2007) CAMD-E x Seaberry, F2 (1998) Deltapine x Giza-83, F2 (2008) Deltapine-61 x Seaberry, F2 (2000) Emian-22 x 3-79, BC1 (2008) Guazuncho-2 x VH8-4602, BC1 (2005) Guazuncho-2 x VH8-4602, BC2 (2006) Handan-208 x Pima-90, F2 (2007) Palmeri x K-101, F2 (2007) Sic'on x F-177, F2 (2004) TM-1 x 3-79, RIL (2006) TM-1 x Hai-7124, BC1 (2007) Tamcot-2111 x Pima S-6, BC3F2 (2005) Vgs x (TM-1 x Hai-7124), DH (2002) Vgs x (TM-1 x Hai-7124), DH (2005) Xinluzao-1 x Hai-7124, F2 (2008) 7235 x TM-1, RIL (2007) DES 119-5 x MD51ne, F2,3 (2002) Deltapine-61 x Texas-701, F2 (2007) HQ95-6 x MD51ne, F2,3 (2002) HS-46 x MARCABUCAG8US-1-88, F2,3 (1998) MD-5678ne x Prema, F2,3 (2000) (Simian-3 x Sumian-12) x (Zhong-4133 x 8891), 4WC (2008) Yumian-1 x T586, F2:3 (2005) Zhongmiansuo-12 x 8891, RIL (2007) TM-1 x WT-936, F2 (2005) Jiang-Ling-Zhong-Mian x Zhe-Jiang-Xiao-Shan-Lu-Shu, F2 SMA-4 x A1-97, F2 (2005) A1-97 x A2-47, F2 (1999) Gt x Gr, F2 (2004) Gos-5024 x Hyb 601-2, F2-a (2003) Gos-5024 x Hyb 601-2, F2-n (2003) Ref_map  
Legend: Correspondences (Corresponding Maps)
Wed Jul 12, 2006
Disclaimers 		Contact CottonDB Curator